Protein Info for DZA65_RS02335 in Dickeya dianthicola ME23

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 PF00005: ABC_tran" amino acids 48 to 197 (150 residues), 135.9 bits, see alignment E=2.3e-43 PF01078: Mg_chelatase" amino acids 60 to 116 (57 residues), 21.1 bits, see alignment E=2.7e-08 PF08352: oligo_HPY" amino acids 248 to 279 (32 residues), 30 bits, see alignment 8e-11

Best Hits

Swiss-Prot: 48% identical to OPPF_BACSU: Oligopeptide transport ATP-binding protein OppF (oppF) from Bacillus subtilis (strain 168)

KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 96% identity to dze:Dd1591_3626)

MetaCyc: 39% identical to putrescine ABC exporter ATP binding protein SapF (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-328 [EC: 7.6.2.16]

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XXE6 at UniProt or InterPro

Protein Sequence (287 amino acids)

>DZA65_RS02335 ABC transporter ATP-binding protein (Dickeya dianthicola ME23)
MSSIMTARDRPLPPIPGNDDIALELCALSRVFRLNRGMFSPPGEIRAVDNVSLRIRRGET
LGLVGESGCGKSTLAKMLLGLLPPTSGNVLIEGREIDAGERRELAGRIQPIFQDPYSSLN
PRRTVADIVEVALRLHHIGTPTERKQRVREMLDRVGMPARTHGQYPGQLSGGQRQRVAIA
RALILQPALLICDEPTSALDVSVQAQILNLLLTLKKELGLTYLFISHNLSVVEYLVDHVA
VMRKGAIVEQGTREQVFGAPQHPYTQALLASVLTPEPGLGIPDIALA