Protein Info for DZA65_RS02270 in Dickeya dianthicola ME23

Annotation: sugar ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 520 PF00005: ABC_tran" amino acids 39 to 188 (150 residues), 110.4 bits, see alignment E=1.2e-35 amino acids 291 to 448 (158 residues), 86.8 bits, see alignment E=2.2e-28

Best Hits

KEGG orthology group: K10441, ribose transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 96% identity to dze:Dd1591_3638)

Predicted SEED Role

"Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XSW1 at UniProt or InterPro

Protein Sequence (520 amino acids)

>DZA65_RS02270 sugar ABC transporter ATP-binding protein (Dickeya dianthicola ME23)
MPTTPVVTTTSPTTQAETAPEVIIETRSLSRVYPGVTALDQVNYRVYRNKVNVLIGENGA
GKSTMMKMLAGVETPSSGQILLDGKPVTLGSTQQAERQGISIIFQELNLFPNMTVMDNIF
IANEFFQRGVINEKFQYALAKTLLERLELDIDPYTPLGELGIGHQQLVEIARALSKDTRV
LIMDEPTSALSQSEVKVLFGVIAQLKRRGVTIIYISHRLEELMAIGDHITIFRDGRCICE
REVRHASVPWIIEQMVGDKKKHFDYQPAPQGDTVLTVAGLTALHQSGGYRLHDVSFSLRK
GEVVGIYGLLGAGRTELFKGLIGLMPCRQGSVQLNDDCLDGLGFRQRLEKGIALVPEDRQ
GEGLVQLMSVRANMTLSSLSLRGFWRAWSWLREPDEARQVDEMVRQLAVKVSDGELPVTS
LSGGNQQKVVLGKALMTRPQVVLLDEPTRGIDVGAKTDVYHLIGRMAQQGLSVMFSSSEL
DEVMALADRILVMADGRITADLPRSQVTREILISASTPHD