Protein Info for DZA65_RS02135 in Dickeya dianthicola ME23

Annotation: DNA-binding transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 107 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF01381: HTH_3" amino acids 52 to 95 (44 residues), 35.2 bits, see alignment E=5.2e-13

Best Hits

KEGG orthology group: K07726, putative transcriptional regulator (inferred from 98% identity to dze:Dd1591_3694)

Predicted SEED Role

"Putative DNA-binding protein in cluster with Type I restriction-modification system" in subsystem Restriction-Modification System

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C521 at UniProt or InterPro

Protein Sequence (107 amino acids)

>DZA65_RS02135 DNA-binding transcriptional regulator (Dickeya dianthicola ME23)
MTAKSKFKSPAFEAIHSAASGLFSVDAIPQETMRNFDNACLNSVESLQPLEIKALREKLN
VSQPVFARYLNTSVSTVQKWESGAKRPSGLSLKLLTVVQKHGLKVLV