Protein Info for DZA65_RS02070 in Dickeya dianthicola ME23

Annotation: LPS export ABC transporter permease LptG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details amino acids 275 to 294 (20 residues), see Phobius details amino acids 303 to 322 (20 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details TIGR04408: LPS export ABC transporter permease LptG" amino acids 4 to 354 (351 residues), 456.1 bits, see alignment E=2.9e-141 PF03739: LptF_LptG" amino acids 7 to 354 (348 residues), 297.9 bits, see alignment E=5e-93

Best Hits

Swiss-Prot: 76% identical to LPTG_ECOLI: Lipopolysaccharide export system permease protein LptG (lptG) from Escherichia coli (strain K12)

KEGG orthology group: K11720, lipopolysaccharide export system permease protein (inferred from 95% identity to ddd:Dda3937_01300)

MetaCyc: 77% identical to lipopolysaccharide ABC transporter permease (Salmonella enterica enterica serovar Typhimurium str. LT2)
RXN1R65-51 [EC: 7.5.2.5]

Predicted SEED Role

"FIG000906: Predicted Permease"

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CWU0 at UniProt or InterPro

Protein Sequence (356 amino acids)

>DZA65_RS02070 LPS export ABC transporter permease LptG (Dickeya dianthicola ME23)
MFRVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGGYSVAGAGVYTLLSVPK
DIEIFFPMAALMGALLGLGTLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIGE
WMAPAGEQMARNYRSQMMYGGSMLSTQSGMWAKDGNDFVYIQRVAGENELVGVNIYHFDK
QSKLLSVRYAASAVYENGAWKLSQVEESDLRDSKQIGGSQTVSGEWKTNLTPDKLGVVAL
EPDALSIRGLYDYINYLRQSGQEANRYLLNMWSKLFAPLSVAVMMLMALSFIFGPLRSVA
AGMRIVIGISFGFLFYVLDQIFGPLSLVYHIPPVLGALLPSALFLFISIMLLLKRR