Protein Info for DZA65_RS01790 in Dickeya dianthicola ME23

Annotation: tol-pal system-associated acyl-CoA thioesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 87 to 109 (23 residues), see Phobius details amino acids 198 to 219 (22 residues), see Phobius details amino acids 240 to 264 (25 residues), see Phobius details TIGR02797: tonB-system energizer ExbB" amino acids 77 to 288 (212 residues), 320.2 bits, see alignment E=3.5e-100 PF01618: MotA_ExbB" amino acids 170 to 268 (99 residues), 109.3 bits, see alignment E=5.7e-36

Best Hits

KEGG orthology group: K03561, biopolymer transport protein ExbB (inferred from 91% identity to ddd:Dda3937_01262)

Predicted SEED Role

"MotA/TolQ/ExbB proton channel family protein" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XSH3 at UniProt or InterPro

Protein Sequence (310 amino acids)

>DZA65_RS01790 tol-pal system-associated acyl-CoA thioesterase (Dickeya dianthicola ME23)
MYTADKNSNQRGSSVWRKSGRVFGGVVHRLMAFALLGMTGSALAAPAPIATGTTAAATGA
PSAPPAAVSSLMSTDLSVWGMYQHADVVVKTVMIGLLLASVVTWAIFFSKSASLTGAKNR
IRREYLALEDARTLDDAADIAGVFKPGSVSLQLLADARNEQELSERSDDNNGIKERTAFR
FERRVAATGRQMGRGTGYLATVGAIAPFIGLFGTVWGIMNSFIGIAQSQTTNLAVVAPGI
AEALLATAIGLVAAIPAVVIYNVFARWTASYKAIVGDVAAQILLLQSRDLDIAASAGNAS
LSPAQKLRVG