Protein Info for DZA65_RS01780 in Dickeya dianthicola ME23

Annotation: DedA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 transmembrane" amino acids 24 to 47 (24 residues), see Phobius details amino acids 65 to 87 (23 residues), see Phobius details amino acids 123 to 144 (22 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details amino acids 188 to 212 (25 residues), see Phobius details PF09335: SNARE_assoc" amino acids 48 to 174 (127 residues), 74 bits, see alignment E=7.6e-25

Best Hits

Swiss-Prot: 67% identical to YGHB_ECOLI: Inner membrane protein YghB (yghB) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 95% identity to dze:Dd1591_3763)

Predicted SEED Role

"DedA family inner membrane protein YghB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CWI1 at UniProt or InterPro

Protein Sequence (219 amino acids)

>DZA65_RS01780 DedA family protein (Dickeya dianthicola ME23)
MSVVHEIIQALWRQDFSALADPHVVWVIYGVLFTTLFLENGLLPASFLPGDSLLLLTGAM
IAKGVMSFIPTMVLLTVAASLGCWLSYLQGRWLGDTRLVKKWLHQLPAHYHQRTCNLFHQ
HGLAALLIGRFLAFVRTLLPTIAGVSGLNSTRFQIFNWLSGFLWVTGIVTLGYSLSQIPL
VKRYEDQVMTALCVLPLVLLFSGLVGMLLMLWRKKRAMA