Protein Info for DZA65_RS01715 in Dickeya dianthicola ME23

Annotation: ADP-ribose diphosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family" amino acids 21 to 205 (185 residues), 243 bits, see alignment E=8.8e-77 PF00293: NUDIX" amino acids 65 to 142 (78 residues), 40.7 bits, see alignment E=1.2e-14

Best Hits

Swiss-Prot: 79% identical to ADPP_SHIFL: ADP-ribose pyrophosphatase (nudF) from Shigella flexneri

KEGG orthology group: K01515, ADP-ribose pyrophosphatase [EC: 3.6.1.13] (inferred from 92% identity to ddd:Dda3937_04303)

MetaCyc: 79% identical to ADP-sugar pyrophosphatase (Escherichia coli K-12 substr. MG1655)
RXN0-7309 [EC: 3.6.1.76]; ADP-sugar diphosphatase. [EC: 3.6.1.76, 3.6.1.21]

Predicted SEED Role

"ADP-ribose pyrophosphatase (EC 3.6.1.13)" in subsystem NAD and NADP cofactor biosynthesis global or Nudix proteins (nucleoside triphosphate hydrolases) (EC 3.6.1.13)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.1.13 or 3.6.1.21 or 3.6.1.76

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4DF44 at UniProt or InterPro

Protein Sequence (217 amino acids)

>DZA65_RS01715 ADP-ribose diphosphatase (Dickeya dianthicola ME23)
MASSDMHPGTFTKPGTFTKDDVEIIARETLYKGFFSLQRYRFRHRLFNGGMSGEVSREIL
ERGHAVVLLPYDPVRDEVVLIEQIRIAAYDTSASPWLFELVAGMIEPGESQEEVARREAQ
EEAGLVVKRCRPALNYLASPGGTSERLAIWIGEVDAGAASGIHGLAEENEDIRVHVVSRE
QSYQWMEQGIIDNAASVIALQWLALHHETLKKDWVDG