Protein Info for DZA65_RS01660 in Dickeya dianthicola ME23

Annotation: alginate lyase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF05426: Alginate_lyase" amino acids 77 to 357 (281 residues), 301.3 bits, see alignment E=3.6e-94

Best Hits

KEGG orthology group: None (inferred from 87% identity to ddd:Dda3937_00716)

Predicted SEED Role

"probable exported protein YPO3473"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4DF53 at UniProt or InterPro

Protein Sequence (433 amino acids)

>DZA65_RS01660 alginate lyase family protein (Dickeya dianthicola ME23)
MRYGIVFQMVLSLWGLGGIASAADIENDNSAYVFLQADKLAEVKQQLRSQSAPPQTQLAY
QQLLREAESSMKKPDLSVTQKRSMPPGGNRHDYWSLAAYWWPDPQRKDGLPWVRHDGKVN
PATKGEETDAIRLATFTERVHVLALAWYFSGRPEYAGKAISMIRTWFITPETRMNPNLNY
AQVIPGRNDGRGAGVLDGRFFATRIVDALVMLRQAPGWGASDEQQTRQWMTDYLHWLLTS
HNGRQEAAAKNNHGNWYTVQVAGIAAYLGQPETVKAMAALQRQKLDHQLTAEGSQPEELA
RTRSFHYSGFNLQAISLMATVAGKYGDNLWQYRTPKGSGLLSALDFMAPYLDESRPWPYK
TMGRESSPLIPLMLQAEQAIGSPRYHAAIRQAGFTPLLTGASEGKTDARISVDVRRRIWL
LSPPPTAGNEPTL