Protein Info for DZA65_RS00420 in Dickeya dianthicola ME23

Annotation: FtsX-like permease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 811 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 177 to 193 (17 residues), see Phobius details amino acids 271 to 295 (25 residues), see Phobius details amino acids 323 to 344 (22 residues), see Phobius details amino acids 372 to 393 (22 residues), see Phobius details amino acids 423 to 445 (23 residues), see Phobius details amino acids 684 to 707 (24 residues), see Phobius details amino acids 741 to 759 (19 residues), see Phobius details amino acids 771 to 794 (24 residues), see Phobius details PF12704: MacB_PCD" amino acids 21 to 235 (215 residues), 53.9 bits, see alignment E=3.1e-18 amino acids 535 to 613 (79 residues), 39.7 bits, see alignment E=7e-14 PF02687: FtsX" amino acids 278 to 398 (121 residues), 45.3 bits, see alignment E=8.5e-16 amino acids 690 to 803 (114 residues), 60.4 bits, see alignment E=1.8e-20

Best Hits

KEGG orthology group: None (inferred from 98% identity to ddd:Dda3937_00964)

Predicted SEED Role

"FIG00839717: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XS05 at UniProt or InterPro

Protein Sequence (811 amino acids)

>DZA65_RS00420 FtsX-like permease family protein (Dickeya dianthicola ME23)
MNVWFDIRYALRLLLKSPGFSVLTITVMACGLGLALYMYSVINTIMYKTLPYPKGEGMVM
VTPNVGGVSLDDSGLNFLDYTELSRQSTKLDDIGYFYAEFLDLNDGNRSVKYIGILSTPH
MFSYTGTSPLMGRVLNDKDMQPDALPVTVISYDLWKSYFNGREDILKQSVQINGVRTYIV
GVMPKGFAFPFFHDIWLPSRIKPLAFSLRSQAPDVYVYAHLNPHFSLDEANQEIVSVMDK
LADKYPESNKGVSAVALSFQVSFMGDDTAQVFLITLSAVAFVLLLACCNVGNLLLARSHQ
RAREIAIRAALGSPMMRLVMQMLWESLIICILAGIVGVLLAAWGLDLTNKIFPRFVPTRV
PSWWHLSLDSSMIVNASILVIVTAFITGALPAWKIANGQFFQALKDGTRGITRYRTSKAG
RSLVIVEMALSFSILCISILFLILVTKAKNVDYGVATDGYLISRVNLNKDSYSTEQSRRS
FYLALSKQLHDIPNLTSEALTTSAPGEFTEAHQFLIENREDGVIGDEGYPMANDVGVMPG
SLTGMGVNVLYGREFSAQDNEKSLPVAVISESLARKYWPDGKSAIGKRIRFRSEDNTDWY
TVIGVVSHVIHGRPFSAFKNRATIYRSLLQRPAPMVTIMLKSEHLVVLPEILKLALYNVD
NLMPVGPPQALNDMIERNTFGVSVLANLFMLFGVITIVLSSSGIYAVTQNAISQRIQEIG
IRQVLGATPNHLLRMLMLQGVNQLIAGLILGLPLALLAAPRINRILGDGRIHFTLLFACV
ALFIVIIVALATWIPSRRVIMMKPGDAIRYE