Protein Info for DDA3937_RS21570 in Dickeya dadantii 3937

Annotation: F0F1 ATP synthase subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 TIGR00962: ATP synthase F1, alpha subunit" amino acids 2 to 512 (511 residues), 862.7 bits, see alignment E=4.4e-264 PF02874: ATP-synt_ab_N" amino acids 29 to 92 (64 residues), 47.7 bits, see alignment E=2.8e-16 PF00006: ATP-synt_ab" amino acids 149 to 375 (227 residues), 270.3 bits, see alignment E=1.8e-84 PF00306: ATP-synt_ab_C" amino acids 382 to 507 (126 residues), 153.7 bits, see alignment E=4.6e-49

Best Hits

Swiss-Prot: 97% identical to ATPA_PECCP: ATP synthase subunit alpha (atpA) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K02111, F-type H+-transporting ATPase subunit alpha [EC: 3.6.3.14] (inferred from 100% identity to ddd:Dda3937_00147)

MetaCyc: 94% identical to ATP synthase F1 complex subunit alpha (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"ATP synthase alpha chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SDS3 at UniProt or InterPro

Protein Sequence (513 amino acids)

>DDA3937_RS21570 F0F1 ATP synthase subunit alpha (Dickeya dadantii 3937)
MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGIIRVHGLADVMQGEMISLPGNRY
AIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGP
LEHDGFSPVEAIAPGVIDRQSVDQPVQTGYKSVDAMIPIGRGQRELVIGDRQTGKTALAI
DAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALSNTIVVVATASESAALQYLAPY
AGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLER
AARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLESNLF
NSGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQ
LSHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLEDVELAKVGSFEAALLAYASREHG
ELLQQIDQTGAYNDEIEGKFKSILDTFKATQSW