Protein Info for DDA3937_RS21515 in Dickeya dadantii 3937

Annotation: ATP-grasp domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 PF02655: ATP-grasp_3" amino acids 134 to 219 (86 residues), 33.1 bits, see alignment E=5.7e-12 PF13535: ATP-grasp_4" amino acids 171 to 270 (100 residues), 42.8 bits, see alignment E=4.3e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (388 amino acids)

>DDA3937_RS21515 ATP-grasp domain-containing protein (Dickeya dadantii 3937)
MKKVALIGGWDALVDLVVDQGHALYLYYFNDDDFNEVSISRCQMAMKLSHINKLDDVISS
HCKRYGFDLIYSHKEVHQEKVAKLAEALEVNGLNFQAVHAFKNKFAFRSLLEKLTHHSTA
WKEVNSREEIAHFIEQVGSDIILKPHDGMGSNNIRKISHINELENIQDFPLLAETFVGGN
EYSVEFISCNGQHYPVGITEKVTSGQPYFFEISHTFPAELSVHQAENVYSATRAMLSLAG
YQNGASHTEFKIQDQQVFLIESHTRVGGDRIPVLISESSGYDIIKENMNALLGELVHLPV
DIHYQKNASIIYFHGDGGELISTSFLDEIRSRCGEKLLLLKFDYKLNDLIPETKSSSTRY
GFAIISGSEKELVEKIIKLSDISTFLKK