Protein Info for DDA3937_RS21405 in Dickeya dadantii 3937

Annotation: CsgG/HfaB family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF03783: CsgG" amino acids 43 to 221 (179 residues), 93.2 bits, see alignment E=1.5e-30 PF04052: TolB_N" amino acids 63 to 129 (67 residues), 26.7 bits, see alignment E=5.1e-10

Best Hits

Swiss-Prot: 73% identical to Y1126_NEIMB: Putative lipoprotein NMB1126/NMB1164 (NMB1126) from Neisseria meningitidis serogroup B (strain MC58)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01084)

Predicted SEED Role

"Probable lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SD10 at UniProt or InterPro

Protein Sequence (223 amino acids)

>DDA3937_RS21405 CsgG/HfaB family protein (Dickeya dadantii 3937)
MNKKVVFCSMVITATLLGGCATESSRTVETPKVVSYNTPYQGVRSPISVGKFENRSNYMN
GIFSDGVDRLGNQAKTILVSHLQQTGRFNVLDRTNMDELKTEAGIKGQAQTLKGANYVVT
GDVTEFGRKEVGDQQLWGILGRGKSQIAYAKTTLNIVNVQTSEVVYSVQGAGEYALSNRE
VVGFGGTASYDSTLNGKVLDLAIREAVNNLVAGIESGAWRPSN