Protein Info for DDA3937_RS21285 in Dickeya dadantii 3937

Annotation: DNA replication/repair protein RecF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 PF13175: AAA_15" amino acids 1 to 46 (46 residues), 36.3 bits, see alignment 1.3e-12 PF13514: AAA_27" amino acids 1 to 96 (96 residues), 23.4 bits, see alignment E=1e-08 TIGR00611: DNA replication and repair protein RecF" amino acids 1 to 355 (355 residues), 439.3 bits, see alignment E=6.1e-136 PF02463: SMC_N" amino acids 3 to 355 (353 residues), 153.3 bits, see alignment E=1.8e-48 PF13476: AAA_23" amino acids 5 to 73 (69 residues), 30.3 bits, see alignment E=1.6e-10 PF13304: AAA_21" amino acids 25 to 46 (22 residues), 27.1 bits, see alignment (E = 9.8e-10)

Best Hits

Swiss-Prot: 91% identical to RECF_PECCP: DNA replication and repair protein RecF (recF) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K03629, DNA replication and repair protein RecF (inferred from 100% identity to ddd:Dda3937_01058)

MetaCyc: 80% identical to recombination mediator protein RecF (Escherichia coli K-12 substr. MG1655)
RXN0-2606

Predicted SEED Role

"DNA recombination and repair protein RecF" in subsystem DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SNF4 at UniProt or InterPro

Protein Sequence (361 amino acids)

>DDA3937_RS21285 DNA replication/repair protein RecF (Dickeya dadantii 3937)
MALTRLLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARV
IRHEQAEFILHGRIEGQERERSVGLSKNRDGDSTVRIDGSDGHKVAELAQLLPIQLITPE
GFTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQVSHYGQLRAWDRE
LVPLAEGISQWRADYSAAIAADIGSTCAQFLPEFSLSFSFQRGWDKESDYAELLERHFER
DRQLGYTALGPHKADFRIRAGGVAVEDMLSRGQLKLLMCALRLAQGEFLTRQNGLKCLYL
IDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGKMFRVEQGKITVQSQ
D