Protein Info for DDA3937_RS21275 in Dickeya dadantii 3937

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 45 to 66 (22 residues), see Phobius details amino acids 74 to 91 (18 residues), see Phobius details amino acids 97 to 115 (19 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details amino acids 200 to 219 (20 residues), see Phobius details amino acids 244 to 264 (21 residues), see Phobius details amino acids 272 to 292 (21 residues), see Phobius details amino acids 298 to 315 (18 residues), see Phobius details amino acids 333 to 356 (24 residues), see Phobius details amino acids 362 to 381 (20 residues), see Phobius details PF07690: MFS_1" amino acids 14 to 217 (204 residues), 92.9 bits, see alignment E=9.8e-31 amino acids 213 to 380 (168 residues), 65.4 bits, see alignment E=2.2e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01056)

Predicted SEED Role

"Fosmidomycin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SNF2 at UniProt or InterPro

Protein Sequence (394 amino acids)

>DDA3937_RS21275 MFS transporter (Dickeya dadantii 3937)
MKKNKLPLLAQVSAAHWVSHFHMMVLPALMPLISAQRGISYVEIGVALGVFNVVSALVQT
PIGFAVDRIGPRRTLIAGLTLGSLCFLSLGLFTSYSWMLIAMALAGLANAVYHPSDYALL
SRGIAENRMGRAFSVHTFSGFLGTAVAPAILLAVASVTSIEFAFVLSGIFGLLTVPMLLG
ERETRPSAAAQNKHSQVPKVAVFTLPILSLLVLFMLLNLSTNSIQNFSVTALVNGYGMPL
TEANLALTAFLFTSAFGVLAGGSLADKTRHHGMVATGSLVVTAVLVAIVAMYTLPSLATI
LILAVAGFLSGIIAPSRDMLVRNASPAGAEGRVFGVVTTGFNIGGAGGPVVFGWLLDQGH
PSAIFWSAVIFMVITAVMALAQELYSTRQRALTA