Protein Info for DDA3937_RS21170 in Dickeya dadantii 3937

Annotation: PAS domain S-box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 143 PF13188: PAS_8" amino acids 9 to 59 (51 residues), 31.1 bits, see alignment E=3.2e-11 PF08448: PAS_4" amino acids 11 to 121 (111 residues), 44.1 bits, see alignment E=4.4e-15 TIGR00229: PAS domain S-box protein" amino acids 12 to 128 (117 residues), 63.2 bits, see alignment E=1.3e-21 PF00989: PAS" amino acids 12 to 117 (106 residues), 44.7 bits, see alignment E=2.6e-15 PF13426: PAS_9" amino acids 14 to 119 (106 residues), 44 bits, see alignment E=4.6e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01035)

Predicted SEED Role

"FOG: PAS/PAC domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SND0 at UniProt or InterPro

Protein Sequence (143 amino acids)

>DDA3937_RS21170 PAS domain S-box protein (Dickeya dadantii 3937)
MALTLPQFLTVIGDAVIICDVDGTITAWNPAAERLFGFTQSEALGASLDIIIPERQRQRH
WSGYHQTMQSGLTRYGTSLLHVPALTRDGGTISIAFTVALLPGEDGKPASIIAIIRDETA
RFNEERALRQRLAEAEQRATPPS