Protein Info for DDA3937_RS21105 in Dickeya dadantii 3937

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 103 to 127 (25 residues), see Phobius details amino acids 141 to 165 (25 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 232 to 253 (22 residues), see Phobius details amino acids 277 to 300 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 118 to 308 (191 residues), 115.3 bits, see alignment E=1.4e-37

Best Hits

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 100% identity to ddd:Dda3937_01020)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SNB5 at UniProt or InterPro

Protein Sequence (313 amino acids)

>DDA3937_RS21105 ABC transporter permease (Dickeya dadantii 3937)
MRITYLATRLGQALLVLWAAFTLSFMLLQALPGDAVLIKFMSPELGLSAGQIAELRLAYG
ADVPLLTQYAASLSRLLHGDFGLSLQAGLPVSDLLATNLPPTLLLAVLGFGAALLLAFAL
AFLSALTPFTWLRQLFQSVPSLLISIPTFWLGIVLIQVFSFRLGWISVINPGEWEGLVLP
VLTLSAPIAAPIAQVLMRSIDQVLTQPFVAVARAKGMSRRGVLWRHVARNAMLPALTLAG
LLLGELIAGALITETVFGRSGLGQLTQEAVNTQDASVLQAIVLVSATAFVAVNLLVDLLY
PWLDPRLKTASEV