Protein Info for DDA3937_RS21045 in Dickeya dadantii 3937

Annotation: ROK family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 transmembrane" amino acids 213 to 232 (20 residues), see Phobius details PF00480: ROK" amino acids 85 to 374 (290 residues), 139.5 bits, see alignment E=8.7e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01008)

Predicted SEED Role

"probable transcriptional regulator protein, ROK family( EC:2.7.1.2 )"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SNA2 at UniProt or InterPro

Protein Sequence (399 amino acids)

>DDA3937_RS21045 ROK family transcriptional regulator (Dickeya dadantii 3937)
MIEIENDVPVLRQISVRAVMEYLLHAGPASRAAMAKATRLSKQTMSEVILILEERGWVRP
CGLESGKVGRAAMNYEIADDLAYVLGMDVGATSIRLSLVNLRGNEIAHYEEENDNSGGIN
LVNRLCQLKKDLLAQQQIDERKLHSVSVAIPGVINQKTGTLDMAPNLKNMSGFALRDSMQ
QAFGCEVLIENDINAAAIGEYWRGCGQDDHSLAFISLGTGIGLGLILEGILLRGAMGAAG
EISYLPLGGDAYTSESLRQGTLESVLGAAGISKRYHFAGGAANTPVREILSRYADKEPAA
IVTIEETARTAALLVLSVSLMFDPESIIIGGNIGIRPELTERIRFYLNNCSPHPIQLKSS
TLGSQSVLTGSVAISLNKLHNYLFGLPELSRQISLPKHL