Protein Info for DDA3937_RS20620 in Dickeya dadantii 3937

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 103 to 127 (25 residues), see Phobius details amino acids 140 to 158 (19 residues), see Phobius details amino acids 164 to 180 (17 residues), see Phobius details amino acids 193 to 209 (17 residues), see Phobius details amino acids 220 to 245 (26 residues), see Phobius details amino acids 265 to 288 (24 residues), see Phobius details PF12911: OppC_N" amino acids 29 to 76 (48 residues), 46.8 bits, see alignment 2.1e-16 PF00528: BPD_transp_1" amino acids 117 to 298 (182 residues), 105.7 bits, see alignment E=2.5e-34

Best Hits

Swiss-Prot: 45% identical to DDPC_ECOLI: Probable D,D-dipeptide transport system permease protein DdpC (ddpC) from Escherichia coli (strain K12)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to ddd:Dda3937_03241)

MetaCyc: 43% identical to glutathione ABC transporter membrane subunit GsiD (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SMC3 at UniProt or InterPro

Protein Sequence (300 amino acids)

>DDA3937_RS20620 ABC transporter permease (Dickeya dadantii 3937)
MSFYVSRAWLLDETPTTRRQAVWGQRYRLWLGFRTNPLAMLGLFIIVAVLLLSLAAPWLT
SYDPGFQNLSNRLAAPSAGHWLGTDELGRDVFSRILYGGRTTLGMVIAVVALTAPLGLLV
GCIAGYAGGILDKILMRLTDIFLAFPRLVLALAFVAALKPGVESAILAIALTAWPPYARL
ARAETLQFRHTDFIAACRLTGAAPLRIILRHIMPLCVPSLIVRVTLDMSSIIITAASLGF
LGMGAQPPSPEWGTMIATARRFLFNAWWVPLVPCIAIFLTSLAFNFLGDGLRDLLDPKER