Protein Info for DDA3937_RS20180 in Dickeya dadantii 3937

Annotation: YifB family Mg chelatase-like AAA ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 TIGR00368: Mg chelatase-like protein" amino acids 7 to 494 (488 residues), 721.3 bits, see alignment E=2.7e-221 PF13541: ChlI" amino acids 21 to 142 (122 residues), 157 bits, see alignment E=5.9e-50 PF01078: Mg_chelatase" amino acids 191 to 390 (200 residues), 303.7 bits, see alignment E=1.7e-94 PF07728: AAA_5" amino acids 214 to 351 (138 residues), 37.8 bits, see alignment E=5.7e-13 PF00493: MCM" amino acids 288 to 384 (97 residues), 34.7 bits, see alignment E=3.1e-12 PF13335: Mg_chelatase_C" amino acids 402 to 494 (93 residues), 109.4 bits, see alignment E=3.2e-35

Best Hits

Swiss-Prot: 64% identical to COMM_HAEIN: Competence protein ComM (comM) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K07391, magnesium chelatase family protein (inferred from 100% identity to ddd:Dda3937_00246)

Predicted SEED Role

"MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SKS9 at UniProt or InterPro

Protein Sequence (508 amino acids)

>DDA3937_RS20180 YifB family Mg chelatase-like AAA ATPase (Dickeya dadantii 3937)
MTLAVTYTRATIGMQAPEVSIEVHISNGLPALTLVGLPETTVKEARDRVRSALINCGFTF
PAKRITVNLAPADLPKEGGRYDLPIALAILAASEQIAGEKLAQYEFLGELGLSGSLRGVH
GAIPAAMEAHKAGRGLILPEDNKMEITLVPHGDTLLANHLLQVCAFLQGETPLLRGNDIT
PETPAHTPTADLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLD
DEEALESAAINSLIDIQPSLSQWRNRPFRSPHHTASITALVGGGVLPKPGEISLAHNGVL
FLDELPEFERRVLDSLREPLESGEIVISRTRAKVCYPARFQLVAAMNPSPSGHYQGIHNR
MPAQQILRYLNRLSGPFLDRFDLSIEVPLLPPGILRQQTRIGEDSATVRERVFEARKRQL
ARIGRINAQMKSDDIACHCRLKGEDAAYLEEVMSKLGLSVRAWHRILKVSRTIADLGGED
QIHRTHLSEALSYRCMDRLLIQLHKSLA