Protein Info for DDA3937_RS20045 in Dickeya dadantii 3937

Annotation: dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 TIGR02382: TDP-D-fucosamine acetyltransferase" amino acids 49 to 238 (190 residues), 259.4 bits, see alignment E=8.7e-82 PF13302: Acetyltransf_3" amino acids 93 to 227 (135 residues), 26.4 bits, see alignment E=9.7e-10 PF00583: Acetyltransf_1" amino acids 157 to 226 (70 residues), 40.3 bits, see alignment E=3.4e-14

Best Hits

KEGG orthology group: None (inferred from 90% identity to dze:Dd1591_0162)

Predicted SEED Role

"Lipopolysaccharide biosynthesis protein RffC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SKQ3 at UniProt or InterPro

Protein Sequence (238 amino acids)

>DDA3937_RS20045 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase (Dickeya dadantii 3937)
MPVRAEICAEIEPLVWESDFFQRISGRLSFQETAPPLTLADLDRYELCQAKLAANDLATA
DALSALGFRLAEGEVDFSMPVVPVARAMFAVGVRDAEAGDIPALCAAATKSFVLSRFRAP
WYGPDDCGRFYARWVEKAVYGTFDDACLVMGGQGLPLQGFVTLRQTSPSTARIGVLSAWP
GMTGQGIGQRLMQVARVWCQQRGIRRLTVATQTSNLAALRLYLRSGARVESTAYWFYR