Protein Info for DDA3937_RS19980 in Dickeya dadantii 3937

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 59 to 81 (23 residues), see Phobius details amino acids 89 to 107 (19 residues), see Phobius details amino acids 113 to 136 (24 residues), see Phobius details amino acids 147 to 169 (23 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 217 to 238 (22 residues), see Phobius details amino acids 253 to 274 (22 residues), see Phobius details amino acids 281 to 302 (22 residues), see Phobius details amino acids 309 to 332 (24 residues), see Phobius details amino acids 345 to 369 (25 residues), see Phobius details amino acids 376 to 395 (20 residues), see Phobius details PF07690: MFS_1" amino acids 23 to 282 (260 residues), 105.7 bits, see alignment E=5e-34 amino acids 238 to 399 (162 residues), 43 bits, see alignment E=5.7e-15 PF00083: Sugar_tr" amino acids 76 to 189 (114 residues), 39 bits, see alignment E=9.7e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_00281)

Predicted SEED Role

"General substrate transporter:Major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SKP4 at UniProt or InterPro

Protein Sequence (407 amino acids)

>DDA3937_RS19980 MFS transporter (Dickeya dadantii 3937)
MQSILTTPAEGRIPRASREGLILILGGSLTIMGSVMIAAVMPKIDAEFGPRTPAADVLVP
LAITGPALAMALFSPLVGWLADRFGRKNLLILATVLYAVTGMLPALLDDLGSIVLSRLVF
GCAEAAIMTCCTTLIADYWHGQERGRFVNLQVVSIGIVGALFFVIGGALGEHSWRLPFYL
YLLPLLLVPAMIGVLWEPQVKPRARQKQPEVGQPTVSGTLLANYLLVSGGMVLAFVVPVQ
TPALLVQKGITSSTLIGLSAGLGLLASLVGSLLWPWFRHRVGIAGVNTLLLTLEGVGLWL
LVHAGDYPQVLLAVSVHGIGVGMLVPNTMLPVMNALSERHRGKGLGVFTGCLYIGQFISP
LVVAVIANVAHNIQGSIQLLSVASLAGALAWLFTGLKRQSAQIAKDK