Protein Info for DDA3937_RS19800 in Dickeya dadantii 3937

Annotation: anaerobic glycerol-3-phosphate dehydrogenase subunit C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR03379: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
  • amino acids 6 to 398 (393 residues), 726.4 bits, E=3.6e-223
• PF13183: Fer4_8
  • amino acids 9 to 73 (65 residues), 44.9 bits, E=4.3e-15
• PF12838: Fer4_7
  • amino acids 11 to 73 (63 residues), 28.2 bits, E=6.5e-10
• PF13534: Fer4_17
  • amino acids 11 to 73 (63 residues), 34.7 bits, E=6.3e-12
• PF02754: CCG
  • amino acids 166 to 252 (87 residues), 47.6 bits, E=4.5e-16
  • amino acids 296 to 379 (84 residues), 51.6 bits, E=2.5e-17

Best Hits

Swiss-Prot: 77% identical to GLPC_ECO57: Anaerobic glycerol-3-phosphate dehydrogenase subunit C (glpC) from Escherichia coli O157:H7

KEGG orthology group: K00113, glycerol-3-phosphate dehydrogenase subunit C [EC: 1.1.5.3] (inferred from 100% identity to ddd:Dda3937_00319)

MetaCyc: 77% identical to anaerobic glycerol-3-phosphate dehydrogenase subunit C (Escherichia coli K-12 substr. MG1655)
Glycerol-3-phosphate dehydrogenase. [EC: 1.1.5.3]

Predicted SEED Role

"Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3)" in subsystem Respiratory dehydrogenases 1 (EC 1.1.5.3)

MetaCyc Pathways

• glycerol and glycerophosphodiester degradation (4/4 steps found)
• glycerol degradation I (3/3 steps found)
• glycerol-3-phosphate shuttle (2/2 steps found)
• glycerol-3-phosphate to fumarate electron transfer (2/2 steps found)
• glycerophosphodiester degradation (2/2 steps found)
• nitrate reduction IX (dissimilatory) (2/2 steps found)
• glycerol 3-phosphate to cytochrome aa₃ oxidase electron transfer (1/2 steps found)
• glycerol-3-phosphate to cytochrome bo oxidase electron transfer (1/2 steps found)
• glycerol-3-phosphate to hydrogen peroxide electron transport (1/2 steps found)
• sn-glycerol 3-phosphate anaerobic respiration (1/3 steps found)

KEGG Metabolic Maps

• Glycerophospholipid metabolism

Isozymes

Compare fitness of predicted isozymes for: 1.1.5.3

Use Curated BLAST to search for 1.1.5.3

Sequence Analysis Tools

See E0SKK5 at UniProt or InterPro

Protein Sequence (401 amino acids)

>DDA3937_RS19800 anaerobic glycerol-3-phosphate dehydrogenase subunit C (Dickeya dadantii 3937)
MMNRPDTSFENCIKCTVCTTACPVARVNPLYPGPKQAGPDGERLRRKDPALFDEALKYCT
NCKRCEVACPSDVKIGDIIQRAKASHSQHRPTLRDAILSHTDLMGTVATPFAPLVNTLTG
LKPMRQLLDKALKIDHRRQLPRYSHGTFRNWYRQQAAHQRQFAEQVAYFHGCYVNYNHPQ
LGRDLIRVFNAMGVGVQLLTKEKCCGVALIANRFLDKARKQARFNLASLDDAINSRGLPV
IATSSSCTFTLRDEYPHLLGLDNHHVRDGIELATRHLYRLLEQGRTLPLQPLPLRVVYHT
PCHLERMGWTAYTLELLRRIPGLELQVLDSQCCGIAGTYGFKKENYDTAQGIGAPLFRQI
DASGADLVITDCETCKWQIEMSTGKPCEHPFSLLAKALPAE