Protein Info for DDA3937_RS19580 in Dickeya dadantii 3937

Annotation: peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 852 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00912: Transgly" amino acids 54 to 229 (176 residues), 225.6 bits, see alignment E=4.5e-71 TIGR02074: penicillin-binding protein, 1A family" amino acids 65 to 783 (719 residues), 568.2 bits, see alignment E=1e-174 PF17092: PCB_OB" amino acids 316 to 425 (110 residues), 110.1 bits, see alignment E=1.6e-35 PF00905: Transpeptidase" amino acids 429 to 732 (304 residues), 86.1 bits, see alignment E=3.9e-28

Best Hits

Swiss-Prot: 76% identical to PBPA_ECOLI: Penicillin-binding protein 1A (mrcA) from Escherichia coli (strain K12)

KEGG orthology group: K05366, penicillin-binding protein 1A [EC: 2.4.1.- 3.4.-.-] (inferred from 100% identity to ddd:Dda3937_00363)

MetaCyc: 76% identical to peptidoglycan glycosyltransferase / peptidoglycan DD-transpeptidase MrcA (Escherichia coli K-12 substr. MG1655)
Serine-type D-Ala-D-Ala carboxypeptidase. [EC: 3.4.16.4]; 3.4.16.4 [EC: 3.4.16.4]; Peptidoglycan glycosyltransferase. [EC: 3.4.16.4, 2.4.1.129]

Predicted SEED Role

"Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)" in subsystem Peptidoglycan Biosynthesis or Type IV pilus (EC 2.4.1.129, EC 3.4.-.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.-, 2.4.1.129, 3.4.-.-, 3.4.16.4

Use Curated BLAST to search for 2.4.1.- or 2.4.1.129 or 3.4.-.- or 3.4.16.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SJS3 at UniProt or InterPro

Protein Sequence (852 amino acids)

>DDA3937_RS19580 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA (Dickeya dadantii 3937)
MKFVKYLFILAVSCILLGAASLYGLYRYIEPQLPDVATLKDVRLQTPMQVYSADGELIAQ
FGEKRRIPLKLDQVPPTLVNAFIATEDSRFFEHHGVDPQGIIRAAVIALTSGHASQGAST
ITQQLARNFFLSPERTLLRKIKEVFLAIRIEQTLTKEEILELYLNKIYLGYRAYGVGAAA
QVYFGRPVDQLTLAQMAMIAGLPKAPSTFNPLYSYDRAVARRNVVLSRMLDENYITQAQY
DQARSEKLVADYHAPEIAFSAPYLAEMVRQEMVKRYGEDAYNDGYQVYTTITRKLQLAAE
DAVHNNVIAYDMRHGYRGPEQVLWKVGAPALTQDKIVEALKKLPVYGPLFPAVVTDASAD
KAHAMMASGDKIELPLAGVRWARAYRSDDQQGPTPKRVTDVLEAGQQIWVRKVDNDWWLA
QVPDVNSALVSLNPQDGAVLALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKGL
TLATILNDAPITRWDPGAGSDWSPKNSPPEYDGPIRLRQGLGQSKNVVMVRAMRAMGVDY
AADYLERFGFPEQNIVHTESLSLGSASFTPLQVVRGYAVMTNGGYLVDPYFITKIDNASG
STVFTAIPKVVCDTCNLPVIYGDTQRSAVLSDDSMENVATSQENPVQAAPQADPATPSEV
ARQAATQPYAPHVISTPLSFLIKDALNSNVFGEPGWMGTGWRAGKVLQRRDIGGKTGTTN
NSKDAWFSGYGPNIVASVWIGFDDHRRDLGRTSASGVIRDQISGYEGGAKSAEPAWDDFM
KVALAGVPEQKTPPPQGIVTVTIDRSSGKLSDGGANSRQEYFIDGTQPTERAVHDAGTTL
FNTSSGQAEELF