Protein Info for DDA3937_RS19525 in Dickeya dadantii 3937

Annotation: phosphoglycolate phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 PF00702: Hydrolase" amino acids 7 to 187 (181 residues), 118.6 bits, see alignment E=1.1e-37 PF12710: HAD" amino acids 11 to 184 (174 residues), 53 bits, see alignment E=1.5e-17 TIGR01449: phosphoglycolate phosphatase, bacterial" amino acids 11 to 221 (211 residues), 262.3 bits, see alignment E=5.8e-82 PF13419: HAD_2" amino acids 12 to 192 (181 residues), 129.4 bits, see alignment E=4.2e-41 TIGR01509: HAD hydrolase, family IA, variant 3" amino acids 82 to 193 (112 residues), 41.4 bits, see alignment E=3.4e-14 TIGR01549: HAD hydrolase, family IA, variant 1" amino acids 90 to 187 (98 residues), 37.2 bits, see alignment E=7.8e-13 PF13242: Hydrolase_like" amino acids 150 to 218 (69 residues), 40.5 bits, see alignment E=5.3e-14

Best Hits

Swiss-Prot: 77% identical to GPH_PECAS: Phosphoglycolate phosphatase (ECA4088) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K01091, phosphoglycolate phosphatase [EC: 3.1.3.18] (inferred from 100% identity to ddd:Dda3937_04187)

Predicted SEED Role

"Phosphoglycolate phosphatase (EC 3.1.3.18)" in subsystem 2-phosphoglycolate salvage or Glycolate, glyoxylate interconversions or Photorespiration (oxidative C2 cycle) (EC 3.1.3.18)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.18

Use Curated BLAST to search for 3.1.3.18

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SJR2 at UniProt or InterPro

Protein Sequence (232 amino acids)

>DDA3937_RS19525 phosphoglycolate phosphatase (Dickeya dadantii 3937)
MADFSAIRGLAFDLDGTLINSAPGLAEAVDMTLGALSLPHAGEERVSTWIGNGADVLVER
ALRWAGMEPTARQVQDTRSLFDKYYARTVDSGSQLFPDVQDTLTQLAERGFRMAVVTNKP
TPFVAPLLEMLGIGDDFALIIGGDDVTEKKPHPAPLYMVLGKLGLRANELLFIGDSRNDI
QAARAAGCPCVGMTYGYNYGEAIALSHPDVVLDRFADLLTLAGLPLSNDQEA