Protein Info for DDA3937_RS19485 in Dickeya dadantii 3937

Annotation: gamma-aminobutyric-acid receptor subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 224 to 246 (23 residues), see Phobius details amino acids 256 to 274 (19 residues), see Phobius details amino acids 285 to 303 (19 residues), see Phobius details amino acids 323 to 342 (20 residues), see Phobius details PF02931: Neur_chan_LBD" amino acids 28 to 221 (194 residues), 61 bits, see alignment E=5.8e-21

Best Hits

Swiss-Prot: 99% identical to ELIC_DICCH: Cys-loop ligand-gated ion channel from Dickeya chrysanthemi

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_00520)

Predicted SEED Role

"FIG00613364: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SJQ4 at UniProt or InterPro

Protein Sequence (343 amino acids)

>DDA3937_RS19485 gamma-aminobutyric-acid receptor subunit beta (Dickeya dadantii 3937)
MRILWSCCGLVLLLLGLPAWSAPADNAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYI
VAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGSPDTGNKRLMLFPDGR
VIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDE
WWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAAS
WSVFWLESFSERLQTSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILL
IIFAHHRQANGVEDDLLIQRCRLAFPLGFLAIGCVLVIRGITL