Protein Info for DDA3937_RS18745 in Dickeya dadantii 3937

Annotation: amino acid ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 272 PF00005: ABC_tran" amino acids 39 to 197 (159 residues), 131.3 bits, see alignment E=5.9e-42 PF13304: AAA_21" amino acids 143 to 226 (84 residues), 33 bits, see alignment E=9.4e-12

Best Hits

Swiss-Prot: 52% identical to YXEO_BACSU: Probable amino-acid import ATP-binding protein YxeO (yxeO) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_00459)

Predicted SEED Role

"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SHY0 at UniProt or InterPro

Protein Sequence (272 amino acids)

>DDA3937_RS18745 amino acid ABC transporter ATP-binding protein (Dickeya dadantii 3937)
MSEAIDLYSIPRTAPRAVTEKGRIDIQGVGKWFGAHRALDNISLTLPPGSVTVIIGPSGS
GKSTLLRTINHLERVDEGTIRIDGDYIGYRREGDTLYELKEREILRQRLGVGYVFQNFNL
FPHLTVLENIIEAPRVHRLYRRAQAQSVALALLDRVGLRHKANAYPRHLSGGQQQRIAIA
RALALNPKVMLFDEPTSALDPELVGEVLDVIKDLARSGVTMVIVTHEIGFAREVADRVVF
MVDGRIVESGDAQQVLNHPAHPRTVSFLNKVL