Protein Info for DDA3937_RS18380 in Dickeya dadantii 3937

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 59 to 80 (22 residues), see Phobius details amino acids 90 to 113 (24 residues), see Phobius details amino acids 119 to 143 (25 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details amino acids 244 to 269 (26 residues), see Phobius details amino acids 281 to 301 (21 residues), see Phobius details amino acids 309 to 328 (20 residues), see Phobius details amino acids 336 to 358 (23 residues), see Phobius details amino acids 370 to 392 (23 residues), see Phobius details amino acids 399 to 418 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 19 to 230 (212 residues), 71.8 bits, see alignment E=5.5e-24 PF07690: MFS_1" amino acids 58 to 366 (309 residues), 99.7 bits, see alignment E=1.7e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_00387)

Predicted SEED Role

"L-Proline/Glycine betaine transporter ProP" in subsystem Proline, 4-hydroxyproline uptake and utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SH23 at UniProt or InterPro

Protein Sequence (439 amino acids)

>DDA3937_RS18380 MFS transporter (Dickeya dadantii 3937)
MAGEQHRRLNRHDYKTLSLAALGGALEFYDFIIFVFFAAVIGDLFFPSDIPEWLRQVQTF
GIFAAGYLARPLGGIVMAHFGDRVGRKKMFSLSILLMALPTLGMGMLPTYASIGIAAPLL
LLLMRVLQGAAIGGEVPGAWVFVAEHVPRSRIGIACGTLTAGLTLGILFGSMIATLLNTL
LPPAQIVAGGWRIPFFIGGIFGLIALYLRRWLQETPIFREMQAHKALAEELPLKTIVLRH
KKAILVSMLLTWMLSAGIVVVILMAPVYLQKLHGIPAALTLQANSLATVALMVGCIVAGL
AADRIGVGRTFIIGSLLFATCSWLFYSHAAQSHSLLFISYALAGLSVGVVGAVPYVMVRA
FPAAVRFSGISFSYNVAYAIFGGMTPIFVTLMMKWTPLAPAFYVLALCALGLVLGIYLQS
HTHREVEAQAEQVGSPAGV