Protein Info for DDA3937_RS18215 in Dickeya dadantii 3937

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 36 to 56 (21 residues), see Phobius details amino acids 68 to 85 (18 residues), see Phobius details amino acids 104 to 128 (25 residues), see Phobius details amino acids 137 to 155 (19 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 226 to 249 (24 residues), see Phobius details amino acids 259 to 285 (27 residues), see Phobius details amino acids 308 to 326 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 36 to 323 (288 residues), 125.7 bits, see alignment E=9.7e-41

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to ddd:Dda3937_01370)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SGB3 at UniProt or InterPro

Protein Sequence (347 amino acids)

>DDA3937_RS18215 branched-chain amino acid ABC transporter permease (Dickeya dadantii 3937)
MRMPRTSPTMWLGYLAVFALALLALTGLDALFNDYIVRIFCNIFIFMILAVSYNLINGVT
GQLSLEPNGFVAIGAYITALLLLSADAKTNMFEMTAPSPLILAVHASFLPALIISGVCAA
AVAVCLSFPVFRVRGDYLAIVTLGFGFIIKIFAINNPQFTNGAIGLNEIPQVSHILYWCG
FIALAAVLFILQLVYSKYGRAMKAVRDDEDAAIAMGINTFRVKTCAFATSAFFEGIGGGL
LASLLTIISPDLFDFMLTFQLLIIIVLGGLGSTTGAILGTIIVIGSGEWLRFLDQPLTLF
GQDLGAHPGLRMVVFSLVLLVIMLFAREGLLGKQEVWDIRRRSANGK