Protein Info for DDA3937_RS18135 in Dickeya dadantii 3937

Annotation: siderophore-interacting protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 PF08021: FAD_binding_9" amino acids 15 to 130 (116 residues), 112.9 bits, see alignment E=1.1e-36 PF04954: SIP" amino acids 146 to 295 (150 residues), 99.6 bits, see alignment E=1.8e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01354)

Predicted SEED Role

"iron-chelator utilization protein" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SG97 at UniProt or InterPro

Protein Sequence (299 amino acids)

>DDA3937_RS18135 siderophore-interacting protein (Dickeya dadantii 3937)
MAGVKEYKVFDVTLARKTLLTPSLMCCVFSGEAVKKMKICSPDQRIKVLLPAADGTPSRL
PDVGEWYKLVQAMPKEQRPIPRTYTLRSLDTVAGEMVVEFVVHGTEGPASAWALSAQPGE
ELQVVAPRGDFAGDNGGYEWVLSENARQVLLMGDETALPAIKGILEKLSQQDNPPQVQAF
IEVPLQADCIDYRHLDFAEVVWLPREGTGATYGERLLDAARQSVRLPEHTHAGAVTVAEI
PDGEIMWERANAQQGQFFGWVAAESSAVKALRRYLLAEKGMTQVSITFMAYWSRGPRSH