Protein Info for DDA3937_RS18035 in Dickeya dadantii 3937

Annotation: UDP-N-acetylmuramate--L-alanine ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01225: Mur_ligase
  • amino acids 21 to 119 (99 residues), 115.2 bits, E=2.2e-37
• TIGR01082: UDP-N-acetylmuramate--L-alanine ligase
  • amino acids 21 to 475 (455 residues), 601.3 bits, E=6.8e-185
• PF08245: Mur_ligase_M
  • amino acids 124 to 304 (181 residues), 90.5 bits, E=2.2e-29
• PF02875: Mur_ligase_C
  • amino acids 339 to 466 (128 residues), 65.7 bits, E=1.1e-21

Best Hits

Swiss-Prot: 90% identical to MURC_PECCP: UDP-N-acetylmuramate--L-alanine ligase (murC) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K01924, UDP-N-acetylmuramate--alanine ligase [EC: 6.3.2.8] (inferred from 100% identity to ddd:Dda3937_02437)

MetaCyc: 86% identical to UDP-N-acetylmuramate--L-alanine ligase (Escherichia coli K-12 substr. MG1655)
UDP-N-acetylmuramate--L-alanine ligase. [EC: 6.3.2.8]

Predicted SEED Role

"UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)" in subsystem Peptidoglycan Biosynthesis (EC 6.3.2.8)

MetaCyc Pathways

• peptidoglycan biosynthesis I (meso-diaminopimelate containing) (12/12 steps found)
• UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) (8/8 steps found)
• UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) (7/8 steps found)
• UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing) (6/8 steps found)
• peptidoglycan biosynthesis III (mycobacteria) (11/15 steps found)
• peptidoglycan biosynthesis II (staphylococci) (12/17 steps found)
• peptidoglycan biosynthesis IV (Enterococcus faecium) (12/17 steps found)
• peptidoglycan biosynthesis V (β-lactam resistance) (11/17 steps found)

KEGG Metabolic Maps

• D-Glutamine and D-glutamate metabolism
• Peptidoglycan biosynthesis

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.3.2.8

Sequence Analysis Tools

See E0SG74 at UniProt or InterPro

Protein Sequence (486 amino acids)

>DDA3937_RS18035 UDP-N-acetylmuramate--L-alanine ligase (Dickeya dadantii 3937)
MNTQELAKLRSIVPEMHRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNAVTQQL
IDLGARIYFHHRPENVNEASVVVVSSAIAADNPEIIAAHEARIPVIRRAEMLAELMRFRH
GIAVAGTHGKTTTTAMVTSIYAEAGLDPTFVNGGLVKAAGTHARLGSSRYLIAEADESDA
SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGHAVMCLDDAVIRELL
PKVGRHITTYGFSDDADVRLADYRQVGAQGLFTLARQGKPLLNVTLNAPGRHNALNAAAA
VAVATEQGIDDDAILRALARFQGTGRRFDFLGEFPLQPVNGKSGSAMLVDDYGHHPTEVD
ATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYSAGEAPIPGA
DSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQGAGNIGKLARRLAENRL
QAKTKD