Protein Info for DDA3937_RS17675 in Dickeya dadantii 3937

Annotation: baseplate J/gp47 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1383 PF04865: Baseplate_J" amino acids 1100 to 1255 (156 residues), 35.1 bits, see alignment E=4.5e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_03069)

Predicted SEED Role

"FIG00613914: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SFB8 at UniProt or InterPro

Protein Sequence (1383 amino acids)

>DDA3937_RS17675 baseplate J/gp47 family protein (Dickeya dadantii 3937)
MTLIWNTPLPPPATSQRQRLPPALEDGAFLVDEMSFETLLVLASDIAAQLSFDGDDEAPL
SCDRNGGAPLSSDRGGEAPQGNWQALFAKSEVTGMAIILSFDAALEQNRFRQAQSRGMDH
TLAYLIALYANLDHWYRAFIPVQTDSADHIKLTIQTVLKAQLVRPFQYLVVLAQALDSYR
PSLLADPRLQTLDPLWGIRYDNGRFIASEQQQLLQQQLPGIQLLEEQLQLCFSAAVNAVS
QLQTDGRRRLQQALSHADHAPEVALYLTFLQLFARAQARLNRFTERHLDFYYRQVLRQQP
QPLTADAVFLKLTPDSGLTTPLSLERGVVFSGGQDARLHDILYRSEQSLQVSDAEVKQVH
SLLLKRDPLMSPERELDFVTAIHSDSLWPWRSDQPRSRTLLTLFGETPALQRYPSPSAPG
LAIIDPVLYLPEGRRRVSLTVNLDDAARPHLAQQLHLLRDAPYPTVLRNRLTTLLLTLAQ
TLTPLLPDDEAPVVIAALVDALTPRQLQALQRSRDDEAISLLYKYFLLGVLRQTSAPTRG
CRVLGHLFSRQTLSRTDWLNDDERRLILDKSRQLLPDDSQPTLAELLNGNRQVNFYRLYS
ELFTLRLSTESGWQTLDAYRIHPLGADDDGPYGFRLTFTLSPGFGAVIPCDPTLHGDHWH
YRAPALQLEMKPETPFFPYSVFRDFVLGPLLLATRVSGVRTFQADTGDGPADVGKTFYPF
GAQPTGQPSLTLASYELAQKPVQDVTLTIDWANLPGGSDGFRQHYQGYPGDYANHRFRAQ
LAVLREGEWKAVGKPFALFASEPGSDRLRPDIQIQADLKQDFQPVRPAADAEAFHFDRAS
RNGLIRLSLYEPEQGFGHHQYGSLLSQTLMHNARRRKPLPLPQPPYTPAIDRLTLGYRAS
TRIHPGHAGYEPSPDSHLLHLHPFGHEVLYPAAESGGDTRPVAFLPRYDDDGNLFIGLQA
SSLGGPLNLFFQLDDRAAPTAIRHRQAFQWRYLVDNDWRALPPHQVIADTTHGFITSGIV
TLDIPPEINDRHTVMPNQLYWLRVSTRQGIGEYAGCLHVATHVVQAVRQWPDGQPPDDEP
TPPAAASGWRALNPPAGLGAISLMMPSAGGAPRESTRQFRQRLSEQLRHKGRALTGWDYE
RLVLQHFPDIDQARCFPHTRFGVPGHQPGQVLLLVRQRHPACRHQPCEPLHASAALLHRI
QTWLQMVAPPGAAIAVRSPVYEKVQVRCSVAFQPGHHPGQALRRLNRDISAYLCPWREDS
ISQGFGASVALRQIEAFIAHLDYVRFVTGFSLITIRQAGLGQSDGQTQRWRLTDSAALAS
HHQTGDPAVNSPNLTGLTPRYPWNIILPVEQHDLRLISDFRPRAPEAIGIGDLTIGDSFI
TVR