Protein Info for DDA3937_RS17600 in Dickeya dadantii 3937

Annotation: IS110 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 PF01548: DEDD_Tnp_IS110" amino acids 4 to 154 (151 residues), 90.1 bits, see alignment E=1.3e-29 PF02371: Transposase_20" amino acids 201 to 286 (86 residues), 80.5 bits, see alignment E=9.3e-27

Best Hits

KEGG orthology group: None (inferred from 99% identity to ddd:Dda3937_04006)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SFA2 at UniProt or InterPro

Protein Sequence (329 amino acids)

>DDA3937_RS17600 IS110 family transposase (Dickeya dadantii 3937)
MYYVGIDISKRVVDVCLLADGIKGKRKTKTLPNGPNAVQALAEWLTRQKCEPSQAHIIME
ATGVYHEHLAYGLHHSGIAVSVINPHRLREFARGMGILTKTDKVDACVLACYGCLRQPEG
WTPPSPEIRKLRALLQHRDSLLGDKQRLENRLSTLNATLTTEEVVTSLESMVQHVKGELE
RIERLIEDHIDRHPGLKNDLKLLKSIDGVGDQIGWNMLATIRGSNFRSAEQVAAYLGVIP
VERRSGTSVRGRARLSKIGPPAIRAKLYMGAIAAISHNRHVKAQYERLLLKGKAKMLAIG
AAMRKLVHLCYGVLHTQQRYDRDYGAVAS