Protein Info for DDA3937_RS17365 in Dickeya dadantii 3937

Annotation: PRD domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 PF03123: CAT_RBD" amino acids 1 to 53 (53 residues), 72.5 bits, see alignment 2.2e-24 PF00874: PRD" amino acids 76 to 163 (88 residues), 74.5 bits, see alignment E=7.2e-25 amino acids 184 to 271 (88 residues), 56.6 bits, see alignment E=2.7e-19

Best Hits

Swiss-Prot: 43% identical to LICT_BACSU: Transcription antiterminator LicT (licT) from Bacillus subtilis (strain 168)

KEGG orthology group: K03488, beta-glucoside operon transcriptional antiterminator (inferred from 100% identity to ddd:Dda3937_02588)

Predicted SEED Role

"Beta-glucoside bgl operon antiterminator, BglG family" in subsystem Beta-Glucoside Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SEG8 at UniProt or InterPro

Protein Sequence (292 amino acids)

>DDA3937_RS17365 PRD domain-containing protein (Dickeya dadantii 3937)
MKITQVLNNNVVSVIDNQGQELILTGCGLGFHSRTGQDVEMPRVEKIFRLQDNAIFARFK
DLAQEVPLEILQLTSDIVETVKKQLQQKLSEGIYVTLADHLAFALQCQRNGTLIQNPLHW
EVRHFYKQEYAVAEQALALIRQSLGVSLPEDEACSIALHIVNAELGDNIGNMKQITQLIY
QVQNIVKYYFQVPLDESNGNYHRFITHLKFFSQRVVEGTSLDNDDGDLFTMVQQRYQKTL
GCVEAINTFIKKNYQHTMTNSEKLYLTIHIDNMIHRLTQNNSSCGTNQHEPI