Protein Info for DDA3937_RS16690 in Dickeya dadantii 3937

Annotation: allantoinase PuuE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 TIGR03212: putative urate catabolism protein" amino acids 13 to 313 (301 residues), 532.3 bits, see alignment E=1.4e-164 PF01522: Polysacc_deac_1" amino acids 83 to 168 (86 residues), 31.4 bits, see alignment E=8e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_00907)

Predicted SEED Role

"FIG00614013: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SCX4 at UniProt or InterPro

Protein Sequence (315 amino acids)

>DDA3937_RS16690 allantoinase PuuE (Dickeya dadantii 3937)
MTLSQQWGSDPDYPRDLIGYAGKPPHARWPGQARIAVQFVLNYEEGAENHVLHGDAGSEQ
FLSDIIGAASYPARHMSMDSLYEYGSRAGFWRIHQEFQRRGLPLTVFGVAMALARNPAVV
EAIRAADYDVVSHGWRWIHYQNMDIDTERAHLQQAIAAHTELFGQPPLGWYTGRDSPHTR
QLVLEQGGFLYDSDYYGDDLPFWLPVRQVDGGVRPHLIVPYTLDANDMRFASPQGFNSGE
QFFSYLKDSFDVLYAEGDEAPKMMSIGMHCRLLGRPGRFRALQRFLDYIQQHERVWVCRR
QDIAEHWYRTHPYPA