Protein Info for DDA3937_RS16585 in Dickeya dadantii 3937

Annotation: class II glutamine amidotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 PF13230: GATase_4" amino acids 1 to 252 (252 residues), 372.7 bits, see alignment E=4e-116

Best Hits

Swiss-Prot: 83% identical to YAFJ_ECOLI: Putative glutamine amidotransferase YafJ (yafJ) from Escherichia coli (strain K12)

KEGG orthology group: K07008, glutamine amidotransferase (inferred from 100% identity to ddd:Dda3937_00099)

Predicted SEED Role

"Predicted glutamine amidotransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SCV3 at UniProt or InterPro

Protein Sequence (255 amino acids)

>DDA3937_RS16585 class II glutamine amidotransferase (Dickeya dadantii 3937)
MCELLGMSANVPTDICFSFTGLMQRGGRTGPHRDGWGITFYEGNGCRTFKDPLPSFNSPI
AELVQNYPIKSCAVVSHIRQANRGAVALENTHPFTRELWGRNWTFAHNGQLKGYRRLKTG
HFRPVGETDSEYAFCWLLYQLSQRYPRTPSNWPAVFRYIATLADQLRKKGVFNMLLSDGQ
FVMGFSSTKLHWITRRAPFGKATLLDDDVEIDFQQQTTPNDVVTVLATQPLTGNETWHPI
MPGEFVLFCFGERVI