Protein Info for DDA3937_RS16325 in Dickeya dadantii 3937
Annotation: phosphatidylserine decarboxylase family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01613, phosphatidylserine decarboxylase [EC: 4.1.1.65] (inferred from 100% identity to ddd:Dda3937_03171)Predicted SEED Role
"FIG00613581: hypothetical protein"
MetaCyc Pathways
- superpathway of phospholipid biosynthesis III (E. coli) (11/12 steps found)
- superpathway of cardiolipin biosynthesis (bacteria) (10/13 steps found)
- phosphatidylserine and phosphatidylethanolamine biosynthesis I (2/2 steps found)
- cardiolipin and phosphatidylethanolamine biosynthesis (Xanthomonas) (3/4 steps found)
- superpathway of phospholipid biosynthesis II (plants) (10/28 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 4.1.1.65
Use Curated BLAST to search for 4.1.1.65
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See E0SC93 at UniProt or InterPro
Protein Sequence (469 amino acids)
>DDA3937_RS16325 phosphatidylserine decarboxylase family protein (Dickeya dadantii 3937) MTRSKNHTASTPEVDYESSGHSLLTLDNAGPIQMGFWVPNRVWATAKFLMPLREHIANRK QANTLTPMQPVLQNFKNWVTNHSVYRMWLNSMIEQSNAYVASLPESTRKEISDDGDATWI DGYDSFFEILNEIITTSPSFNTTAQVGTPMNAFLAVAMGTEAGVALFHDATFNQQFRQVL DAWNCFLKSSASLDKLDIAQPEKAGSWISKAAHQAGVWHQMQHDPNLPGYGFASWNDFFI RQFVPGARPFQGDPNTQVDIGCETTPWRYADQLQLESRFWVKDIPYSLLDLFGGQRQWAK LFEGGQLYQGFLSATHYHRWNAPLDGFLVRSWVEPGTYFAQRPGQGEDQGTWEGTESQPY LGHVAARAVFIFRHKTCGYVALICIGMVEVSSCVIEPSTFIVEESAEPVGITRGVEIGHF EFGGSTHMMIFQKDRVALEKWAIDAARHRNDKNPTPLGSVIATALHKSQ