Protein Info for DDA3937_RS16260 in Dickeya dadantii 3937

Annotation: SRPBCC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 170 PF10604: Polyketide_cyc2" amino acids 18 to 156 (139 residues), 34.7 bits, see alignment E=2.1e-12 PF03364: Polyketide_cyc" amino acids 27 to 146 (120 residues), 44.5 bits, see alignment E=1.8e-15

Best Hits

KEGG orthology group: None (inferred from 79% identity to ddc:Dd586_3188)

Predicted SEED Role

"FIG00613412: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (170 amino acids)

>DDA3937_RS16260 SRPBCC family protein (Dickeya dadantii 3937)
MPPAFLRRSGITDNHTDRLSSSLVIFRPADVLFDLWRDPKTLPVLMNHVARIDIINSTDS
LWRMKAPLGQYIEWQARIVDEQPGQFIHWRSLPGARIPNEGRLSFRPAPHGDGTEVTLSI
RFDPPGGFLGRTLSQVFQLLPKEMLHKTLLRFKQMAEQPGAGTTPPPDER