Protein Info for DDA3937_RS15320 in Dickeya dadantii 3937

Annotation: Gfo/Idh/MocA family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 PF01408: GFO_IDH_MocA" amino acids 2 to 119 (118 residues), 93.9 bits, see alignment E=1.7e-30 PF03447: NAD_binding_3" amino acids 8 to 114 (107 residues), 28.2 bits, see alignment E=4.1e-10 PF02894: GFO_IDH_MocA_C" amino acids 134 to 381 (248 residues), 64.5 bits, see alignment E=1.9e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02810)

Predicted SEED Role

"Nucleoside-diphosphate-sugar epimerases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SN45 at UniProt or InterPro

Protein Sequence (383 amino acids)

>DDA3937_RS15320 Gfo/Idh/MocA family oxidoreductase (Dickeya dadantii 3937)
MINVGIIGSGFIGPAHIEAIRRLGFVNVVALCDSTLALAQEKARQLAIPHAYGDVDALLN
HPGLDVVHNCTPNYLHAAINRKAMLAGKHIFSEKPLCMTSEEARELVALAQEKGIVHGVS
FVYRHFAMVQQAASMIRQEALGRLFAVHGGYLQDWMLYETDYNWRVDAAKGGLSRTVADI
GSHWCDTLQFVTGRKIVEVMADLATVYPTRKASRQAAATFCGPDAAREYEDKPVTTEDFA
AILLRFDDGSRGSLTVSQVSAGRKNRLHFEINGGRASLAWDQELPQNLWIGQRDRPNQLL
CDDPALMNADVSSQAHFPGGHIEGWPDAFKNMMLRFYSYIREGKQPQVDPCDFATFHDGA
TIMFIIDAIVRSHREQRWIAIPA