Protein Info for DDA3937_RS15225 in Dickeya dadantii 3937

Annotation: YccF domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 transmembrane" amino acids 7 to 35 (29 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details amino acids 99 to 124 (26 residues), see Phobius details PF03733: YccF" amino acids 4 to 53 (50 residues), 37.9 bits, see alignment E=1.1e-13 amino acids 77 to 127 (51 residues), 67.9 bits, see alignment E=4.9e-23

Best Hits

Swiss-Prot: 83% identical to YCCF_ECOLI: Inner membrane protein YccF (yccF) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02828)

Predicted SEED Role

"Inner membrane protein YccF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SN23 at UniProt or InterPro

Protein Sequence (148 amino acids)

>DDA3937_RS15225 YccF domain-containing protein (Dickeya dadantii 3937)
MRAVLNILNFVLGGFFTTLAWLLATAVSIVLVFTLPLTRSCWEITKLSLLPYGNEAIHID
ELRPEQKSSLLNAGGTLLNVFWLVVFGWWLCLSHIVSGIAQCLTIIGIPVGIANFKIAAI
ALWPVGRRVVSVEEAQAAREANARRRYQ