Protein Info for DDA3937_RS15010 in Dickeya dadantii 3937

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF13379: NMT1_2" amino acids 26 to 252 (227 residues), 59.1 bits, see alignment E=9.1e-20 PF09084: NMT1" amino acids 40 to 249 (210 residues), 66.7 bits, see alignment E=4.4e-22 PF12974: Phosphonate-bd" amino acids 74 to 208 (135 residues), 28.5 bits, see alignment E=1.6e-10

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 100% identity to ddd:Dda3937_01664)

Predicted SEED Role

"ABC transporter substrate-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SM88 at UniProt or InterPro

Protein Sequence (320 amino acids)

>DDA3937_RS15010 ABC transporter substrate-binding protein (Dickeya dadantii 3937)
MSTAPGRTGWTVSLMAVCLAAAVSAQAEETPVAIGISGWTGFAPLTLADKAGIFQQHGLK
VDLKMIPQKDRHLAVASGAIQCAATTVETYVSWAASGVVLKQIVQLDKSYGADGLAVRND
IRSVHDLKGKTIGVDAPGTSPYFALAWILDKNGMSLKDVKVATLSPQAAAQAFVAGQNDA
AMSYEPYLSTVRQQPDKGKILATTLDYPMVMDTLGCTPDFLKKHPQVGKALVDSYFDALA
MIKTQPDKAYEIMGAAVKTSGQAFAQSAQYLRWQDREQNRVFFSGEIARFSEEAAKLLLE
AKVIRQKPDLSALYDASYVK