Protein Info for DDA3937_RS14915 in Dickeya dadantii 3937

Annotation: glycosyl hydrolase 53 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF07745: Glyco_hydro_53" amino acids 39 to 398 (360 residues), 381.7 bits, see alignment E=1.4e-118

Best Hits

KEGG orthology group: K01224, arabinogalactan endo-1,4-beta-galactosidase [EC: 3.2.1.89] (inferred from 100% identity to ddd:Dda3937_02392)

Predicted SEED Role

"Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)" in subsystem Lactose and Galactose Uptake and Utilization (EC 3.2.1.89)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.89

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SM65 at UniProt or InterPro

Protein Sequence (399 amino acids)

>DDA3937_RS14915 glycosyl hydrolase 53 family protein (Dickeya dadantii 3937)
MKKMIPALLAVSLALGAAPLMAAESVVIKPLRNAPADFIKGADISTLLEVERQGGVFYDE
NRARVDPIALLKKNGVNYIRLRLWVDPRDAAGHPYGGGDNDLATTLTLAKRAKAQGLKLL
LDLQFSDFWTDPGKQFKPKAWAHLSYDQLKVVIHDYTRDTIARFKREGVLPDMVQIGNEA
NGGILWPEGKSWGQGGGEFDRLAGLLNASIAGLRENLSSPGQVKIMLHLAEGTKNDTFRW
WFDEITKRGVPFDVIGLSMYTYWNGPISALKANMDDISQRYNKDVIVVEAAYGYTLANCD
NAPNSFGAKEAAAGRYPATVQGQADFIRDLMQSVIDVPNRRGKGVFYWEPTWIIAAGNTW
ATEAGMDYINDHGFIGNARENQALFNCQGEALPSIKVFN