Protein Info for DDA3937_RS14685 in Dickeya dadantii 3937

Annotation: non-ribosomal peptide synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2845 transmembrane" amino acids 533 to 552 (20 residues), see Phobius details amino acids 645 to 663 (19 residues), see Phobius details PF00668: Condensation" amino acids 11 to 454 (444 residues), 208.2 bits, see alignment E=5.1e-65 amino acids 1093 to 1509 (417 residues), 99.8 bits, see alignment E=3.8e-32 amino acids 1552 to 1983 (432 residues), 200.1 bits, see alignment E=1.5e-62 PF00501: AMP-binding" amino acids 478 to 839 (362 residues), 259.7 bits, see alignment E=1.1e-80 amino acids 2003 to 2363 (361 residues), 303.8 bits, see alignment E=4.1e-94 TIGR01733: amino acid adenylation domain" amino acids 499 to 912 (414 residues), 379.2 bits, see alignment E=2.3e-117 amino acids 2023 to 2436 (414 residues), 435.8 bits, see alignment E=1.5e-134 PF13193: AMP-binding_C" amino acids 896 to 974 (79 residues), 34.1 bits, see alignment (E = 1.1e-11) amino acids 2420 to 2503 (84 residues), 28.6 bits, see alignment (E = 5.6e-10) PF00550: PP-binding" amino acids 1001 to 1062 (62 residues), 42.2 bits, see alignment (E = 2e-14) amino acids 2529 to 2592 (64 residues), 48.6 bits, see alignment (E = 2e-16) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 1384 to 1507 (124 residues), 76.8 bits, see alignment (E = 1.8e-25) PF00975: Thioesterase" amino acids 2617 to 2833 (217 residues), 122 bits, see alignment 1.1e-38

Best Hits

Predicted SEED Role

"Enterobactin synthetase component F, serine activating enzyme (EC 2.7.7.-)" in subsystem Siderophore Enterobactin (EC 2.7.7.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.-

Use Curated BLAST to search for 2.7.7.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SLD8 at UniProt or InterPro

Protein Sequence (2845 amino acids)

>DDA3937_RS14685 non-ribosomal peptide synthetase (Dickeya dadantii 3937)
MTPIHQAGSLELPLVAAQPGIWMADQIASQPNAFAVAHALELCGPVDPLRLSTAIRQGLA
EADTVQARFGLNNLGEPVQWLPSATDAASIREPERLDFSDPAQGEQAAWALMRADLAAPL
PADGGQPLYRQVIMRVSAQPERWFWYQRFHHLMLDGFSFDALTRRIVEIYNALSAGETPT
DSPFTSFADVVTEYQAWERSPACQQAAAFWREHAGELPTPVSLAADVCAPAPAETRTLHQ
QVTVPVAPFVALAEQRFGGKVQPAEIAMAALAVYLYRMSGESRLSVGFPFMRRMGSAALC
ACGPVVNVLPLQLTLQPDMTLVSATQTLLTEIKSVRRHQRYEAEQLRRDLGLVGGSEGLY
GPVINFKVYNAGLTLGNTPVTTHVLAMGPVDSLEFTLGVQDGELQLELVANPARYDSPSL
LGHAQRLQHLLAQLVQEPDQAIGALSLLSDNEWRHIDGWGSGPHLTISATLRSVLDCLQQ
QVQQQPDALAVVCGKERLSYRELSARVMQLARKLTAQGIGAGDVVAIGVPRSVSSVVAIF
GVLTSGAAYMPLDLDYPRERLTLMCDDARPALLLTHSAVRAQMPELPQVLCLDDADLRAE
CARLPTHPVTDAERREPLCGEHLAYMIYTSGSTGKPKGVMSTHAGLLNLMMSHSSFLFGP
AIARFSQQHGRRLRAGHTASFSFDSSWEPLFCMMMGSELHIFDEELRKDAWALVQHLNQT
PIDLMDITPSFFTQMIDSGLLEADNHQPAFIMIGGEAATPRLWQLMRQHPQMEIHNYYGP
SEYTIDTLGARVTVADQPVIGQPVANTRVWLLDNQLRPVPVGVPGELYIAGPGLARGYLR
RPDLTATRFVACPFIPGAVMYRTGDLMRWRHDGQLAFIGRVDHQIKVRGFRVELGEVENA
LVALAEVSTAVVIAEPLGATYRLIGYCSVPDAATREQPDVAARLLAQLAEQLPDYMIPAV
LMVMEELPLTVNGKIDRQALPKPQQAAAVAGREPATEQERLICQAIASLLKLDAVSAEAD
FFALGGDSISAMGLGTLLRRAGWQLRPKVIFAERTPARMAQAMQPLATVAAPARTVRHGV
VDGLPIVHSFARLAGIESSFAHGVFLSVPEALQPAHLIQALSALAQAHPALTALTRDGQL
VIEASAPATVSLHSETLTAQEPVDAAAERAFEAAVTRLDPAAGRMMQAVLLQRDDRACGL
VLVIHHLVVDGVSWRVLLPELRQAAEAAMAGQPTALPAEECSLFDWSASLKGQVTARRAE
LPFWQSALAASLPRLGQRRLDPARDREQTRRLARQVLDAGLTHAVLTTLPERYHARVDEI
LLGALMQACHRRFGVQPLRLALESHGRIDTADGLDLGRTVGWLTAEYPVCIDAPAAQAAT
PWAILRSVKGALRAVPDRGVGYGVLRYLDAQSVDALAVLEDHAPEILFNYLGRFESGEGP
WSPRRSDRYFRDAFAVAQAMPLSHPLDINIFVDEQGEQPQLAIHWGWAPGVFDTDDIEAL
HQGMTQAIDEWRDLAGYPPLSDTLVSAEVALAGVNDEALDRLRQHYGPLAAVLPVLPLQQ
GLLFHAQLADAVGSYNSLTRLSLRGPLSVAQLSQALEAVVRHHPQLAARFDTEQASAPLQ
VLPILRDDHCYWPLDHQTLPAMPTGEEADALLALEKAELARDLFHQPSSMLHALLVSHAD
GERHTLFLNAHHLVVDGWSTPVCLRDLFTTLYQGRSALTPHAVPYADIIRQLAARDAEAS
RQCWREVLTGARPTLLFGDGPHHDEVRELELLPEPQLEQGLLSLCKQYGLTLNSVMQGIW
GMLLCAGSGADDVLFGSPVSGRFGQIDGISQQVGLFSNTLPVRVRLDASRALPPQLAELQ
AQQIQLIEHDDVGLGEIQQLAGTGTLFDTLLVVENYPDGDELSQAGQALRCEAVNNRGYT
HYPLTLLVLPGKRLRLLMEYRDSVAQPQRLAQRLLLLLEQLVAAPERPLSAWNLQLPEEQ
ALLAAVNRTEQPVPPGTLHQALAAQAQRTPDRIALVDCQHQLTYRQVQHQTRLLADRLSD
AGVRPGDIVAVALPRSVRLSLALYAILEAGAAYLPLDTGYPDERLALMVEDAQPRLMITE
SSLQSRFAELADLLLLDTLADERQSPRHPSPLVAEQSSLIAEQQAAYVIYTSGSTGRPKG
VVVGHQAIVNRLWWMQHQYPLQADDVVLQKTPCSFDVSVWEFFWPLMTGARLVMAPPDAH
RDPDALVQLINDYAVTTMHFVPSMLAAWVSALETRPRAEIGCSSLRRVFCSGEALSRELA
LNYQSLIAAPLHNLYGPTEAAVDVTWQPASGEALERCQLPGIPIGLPVWNTQLRILDGAL
RPAPVGVPGDLYLCGIQLAQGYLRRPDLTASRFVADPFATGERMYRTGDIARWLEDGTVD
YLGRSDDQLKIRGQRIELGEIEQVLLAQPNVAQAVVGARELGGKANRLRGADARQLVAWL
VPQAETTLDIAALQQALSQQLPAHMVPVSYVLMTSFPLSANGKLDRKALPAPAGQQADGR
APQTDVERTIAALFAELLTCETVSAEDDFFALGGHSLLAMRLAAEIRRQLQRSLTVGQIM
AARSVASIAALVEGDTDGSQDGNGETLPLRSGRGPVLFCLHPASGFAWQYAGLLRYLEGD
YPIVGLQSPRPDGVIARCESVAAMCDRHLATIRRIQPQGPYFLLGYSLGGTLAHGIAARL
QQAGETVSFLGLLDTYPPEGQDWTAPDEADAREEVAREQAGFMADMQAGEDSQLRAERAA
MFGNIVANYQDAVRLLSSARSSRFAGEATLFVATRTLPADMDVDATWAPYVSKLTQYPQP
CEHADILSPASLENLGPLLNQLLCR