Protein Info for DDA3937_RS14505 in Dickeya dadantii 3937

Annotation: flagella biosynthesis regulator Flk

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 386 to 404 (19 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02114)

Predicted SEED Role

"Putative flagellar assembly regulatory protein, Flk"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SLA0 at UniProt or InterPro

Protein Sequence (405 amino acids)

>DDA3937_RS14505 flagella biosynthesis regulator Flk (Dickeya dadantii 3937)
MQPISNPGNVSLQGEKPLETALSKTATSQTDDLPLTLAQRTTLEKLVTQISTLSGAKPAE
IWATVRAELGTKNNAELLASQFPAAEQSLQNRLTTVQGSQDSRQLLQQLTNLLSQGNNRQ
AVSDFIRQQFGHTVLSSLTPSQLKLVVTLLQNGQLPQAATLLSTGNTSALPFDTTATGQP
IQFPQTPTATTIPPPLPQTSQQLAALLQAGVVPDGLTANSSPAATALLDRALLPAEHNQL
NQLVAKLVALSGESPGKVWQTLMEMQGLKTGDPIPAKNFQALSQFLNTQSVLLQQHTLPT
LHTLQAALKQPLDQQEQQLLQDFTRNTLNITPQTPLTPSQISEVVTFLYRRRLQQIQEAS
VTPLQPFINPLIVALPQEWRTLVNKPIGLALVALLVVALLMWIVL