Protein Info for DDA3937_RS14490 in Dickeya dadantii 3937

Annotation: tripartite tricarboxylate transporter substrate binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF03401: TctC" amino acids 110 to 311 (202 residues), 77.2 bits, see alignment E=5.9e-26

Best Hits

KEGG orthology group: K07795, putative tricarboxylic transport membrane protein (inferred from 100% identity to ddd:Dda3937_02111)

Predicted SEED Role

"Tricarboxylate transport protein TctC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SL97 at UniProt or InterPro

Protein Sequence (325 amino acids)

>DDA3937_RS14490 tripartite tricarboxylate transporter substrate binding protein (Dickeya dadantii 3937)
MKKYLALSLTLCGLFTSVPPTQAAAPTRTECIAPAKPGGGFDLTCKLLQISLQETGTLDS
PMRVTYMPGGVGAVAYNAIVAQRPDEPGTVVAFSGGSLLNLAQGKFGRYGVDDVKWLAAV
GTDYGMIAVRADSPYQTLKDLLAAMQKNPNQVVVGAGASIGSQDWMKTAMLARHAGISPR
DMRYVAFEGGGEPLTAMLGGHVQAVSGDISEMVPHLQGGKIRVLAVFSEQRLPGQLADVP
TAKEQGYDLVWPIIRGFYLGPKVSDASYQWWEQAFKHIAATDEFKKQRDLRGLFEFNLTG
QALDAYVKKQVADYREQAKLFGLAK