Protein Info for DDA3937_RS13450 in Dickeya dadantii 3937

Annotation: flagellar basal body L-ring protein FlgH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 transmembrane" amino acids 16 to 30 (15 residues), see Phobius details PF02107: FlgH" amino acids 53 to 237 (185 residues), 208.7 bits, see alignment E=2.4e-66

Best Hits

Swiss-Prot: 82% identical to FLGH_PECAS: Flagellar L-ring protein (flgH) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K02393, flagellar L-ring protein precursor FlgH (inferred from 100% identity to ddd:Dda3937_02209)

Predicted SEED Role

"Flagellar L-ring protein FlgH" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SIK6 at UniProt or InterPro

Protein Sequence (238 amino acids)

>DDA3937_RS13450 flagellar basal body L-ring protein FlgH (Dickeya dadantii 3937)
MNTKSVAALQPCRPRLLAYVMMLTLSGCAYIPHDKVVTGPTTAQPAPPLQAIPNGSIFQT
GQAMNYGYQPMFEDRRPRNVGDTLTIVLQENVSASKSSSANASRDASGSFGMTTTPRLLE
GPLGNNRAAFNATGKDDFTGKGGANANNTFTGTITVTVDQVLTNGNLHVVGEKQIAVNQG
TEFIRFSGVVNPRTISGSNTVPSTQVADARMEYVGNGYINETQTMGWLQRFFLNVSPF