Protein Info for DDA3937_RS13420 in Dickeya dadantii 3937

Annotation: flagellar biosynthesis protein FliQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 89 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details transmembrane" amino acids 55 to 77 (23 residues), see Phobius details TIGR01402: flagellar biosynthetic protein FliQ" amino acids 1 to 88 (88 residues), 109.4 bits, see alignment E=3.8e-36 PF01313: Bac_export_3" amino acids 6 to 77 (72 residues), 101.2 bits, see alignment E=1.2e-33

Best Hits

Swiss-Prot: 83% identical to FLIQ_PECCC: Flagellar biosynthetic protein FliQ (fliQ) from Pectobacterium carotovorum subsp. carotovorum

KEGG orthology group: K02420, flagellar biosynthetic protein FliQ (inferred from 96% identity to ddc:Dd586_1527)

Predicted SEED Role

"Flagellar biosynthesis protein FliQ" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SIK0 at UniProt or InterPro

Protein Sequence (89 amino acids)

>DDA3937_RS13420 flagellar biosynthesis protein FliQ (Dickeya dadantii 3937)
MTPESVMALGYEAMKIALMLAGPPLVAALVSGLIISLLQAATQINEMTLSFIPKVLTVFF
TLVVAGPWMLSVILDYMRTMFSQFPNMIG