Protein Info for DDA3937_RS13415 in Dickeya dadantii 3937

Annotation: flagellar type III secretion system pore protein FliP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 45 to 74 (30 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details amino acids 185 to 210 (26 residues), see Phobius details amino acids 221 to 243 (23 residues), see Phobius details TIGR01103: flagellar biosynthetic protein FliP" amino acids 47 to 243 (197 residues), 312.1 bits, see alignment E=7.6e-98 PF00813: FliP" amino acids 48 to 239 (192 residues), 276.2 bits, see alignment E=8.6e-87

Best Hits

Swiss-Prot: 83% identical to FLIP_PECCC: Flagellar biosynthetic protein FliP (fliP) from Pectobacterium carotovorum subsp. carotovorum

KEGG orthology group: K02419, flagellar biosynthetic protein FliP (inferred from 100% identity to ddd:Dda3937_02216)

Predicted SEED Role

"Flagellar biosynthesis protein FliP" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SHW5 at UniProt or InterPro

Protein Sequence (245 amino acids)

>DDA3937_RS13415 flagellar type III secretion system pore protein FliP (Dickeya dadantii 3937)
MRLLRYPAASILLLIAPHALAQLPGIISQPLANGGQSWSLPIQTLVFITSLSFIPAVLLM
MTCFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDK
ISMEVAIEKGSQPLREFMLRQTREADLALFTRLAQIPSLQGPEAVPMRVLVPAYVTSELK
TAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLA
QSFYT