Protein Info for DDA3937_RS13380 in Dickeya dadantii 3937

Annotation: flagellum-specific ATP synthase FliI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 TIGR01026: ATPase, FliI/YscN family" amino acids 6 to 452 (447 residues), 634.8 bits, see alignment E=6.9e-195 TIGR03496: flagellar protein export ATPase FliI" amino acids 29 to 450 (422 residues), 656.8 bits, see alignment E=1.2e-201 PF00006: ATP-synt_ab" amino acids 161 to 372 (212 residues), 293.2 bits, see alignment E=1.2e-91 PF18269: T3SS_ATPase_C" amino acids 380 to 449 (70 residues), 94 bits, see alignment E=4.2e-31

Best Hits

Swiss-Prot: 83% identical to FLII_ECOLI: Flagellum-specific ATP synthase (fliI) from Escherichia coli (strain K12)

KEGG orthology group: K02412, flagellum-specific ATP synthase [EC: 3.6.3.14] (inferred from 100% identity to ddd:Dda3937_02223)

Predicted SEED Role

"Flagellum-specific ATP synthase FliI" in subsystem Flagellar motility or Flagellum

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SHV8 at UniProt or InterPro

Protein Sequence (456 amino acids)

>DDA3937_RS13380 flagellum-specific ATP synthase FliI (Dickeya dadantii 3937)
MTVRLSRWLSSIDAFEKRIANTPAIRRYGRLTRATGLVLEATGLHMPLGSTCLIERQTGN
QVDEVESEVVGFNGQKLFLMPLEEVEGIIPGARVYERVGLSGSSQGKQLPLGPALLGRVL
DGSAKPLDGFPAPDTGYTAPLVTAPFNPLQRTPIEHVLDVGVRAINALLTVGRGQRMGLF
AGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGTEGLARSVVIAAPADV
SPLLRMQGAAYATRIAEDFRDRGHHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSV
FAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRQLAESG
HYPAIDIEASISRAMTALIDENHYSAVRQFKQSLSSYQRNRDLINVGAYAAGSDPLLDRA
IQLYPQMQHFLQQGMFERSSFEEACQALDNIFPYNR