Protein Info for DDA3937_RS13250 in Dickeya dadantii 3937

Annotation: Lon protease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 576 PF13654: AAA_32" amino acids 133 to 225 (93 residues), 49.7 bits, see alignment E=3.8e-17 PF05362: Lon_C" amino acids 433 to 536 (104 residues), 40.6 bits, see alignment E=2.2e-14

Best Hits

Swiss-Prot: 57% identical to LONH_ECOLI: Putative Lon protease homolog (ycbZ) from Escherichia coli (strain K12)

KEGG orthology group: K04770, Lon-like ATP-dependent protease [EC: 3.4.21.-] (inferred from 100% identity to ddd:Dda3937_03409)

Predicted SEED Role

"ATP-dependent protease La (EC 3.4.21.53) Type II" in subsystem Proteasome bacterial or Proteolysis in bacteria, ATP-dependent (EC 3.4.21.53)

Isozymes

Compare fitness of predicted isozymes for: 3.4.21.-, 3.4.21.53

Use Curated BLAST to search for 3.4.21.- or 3.4.21.53

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SHT3 at UniProt or InterPro

Protein Sequence (576 amino acids)

>DDA3937_RS13250 Lon protease family protein (Dickeya dadantii 3937)
MTSNRLEWQQLLPDHTPYQTLFSQAAQLAPAEFSAVQPRLADALTIFCHPRSPSRFMLLK
AQENNAYLALIANAIAHLPARQSETLHGNRYQIDGRQISIQPAQYPDDNFAATLRCGYQE
WIEPEQLFGCVRMYQDDISLQPGLLHRVNGGTLILSARTLLAQPLMWLRLKQIIIDGQYH
WLSPDERRPLPVAIPPMPVDLRLIVLGDRESLGDIHEMEPELGELAIYGEFESQLQLIEP
EDMVHWCSYINALCLENQLPLLAADAWPELFTLAVRYSGDQGNVPLCPQWLLHQLKHAAL
YAREEDITGQAIIDAVTARRWREGYLSERMQDEIELGQILIETEGDMIGQVNGLSVLEYP
GYPLMFGEPTRISCVVHPGDGELTDVERKAELGGNLHAKGMMIMQAFLISELELEQQLPF
SASIVFEQSYSEVDGDSASLAELSALVSALSLLPINQQLAVTGSVDQFGHVQPIGGVNEK
IEGFFEVCQRRGLTGKQGVIIPATNQRHLCLQPEVVDAVREGQFHIYVVDSVAEALILLT
QMPYDDDRQPSLLAAIRERIAQLAPPERRRFPWFFR