Protein Info for DDA3937_RS13245 in Dickeya dadantii 3937

Annotation: macrodomain Ter protein MatP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 154 PF06303: MatP" amino acids 2 to 85 (84 residues), 146.9 bits, see alignment E=3e-47 PF17414: MatP_C" amino acids 88 to 147 (60 residues), 101.6 bits, see alignment E=3.5e-33

Best Hits

Swiss-Prot: 78% identical to MATP_CROS8: Macrodomain Ter protein (matP) from Cronobacter sakazakii (strain ATCC BAA-894)

KEGG orthology group: K09911, hypothetical protein (inferred from 100% identity to ddd:Dda3937_00022)

Predicted SEED Role

"Macrodomain Ter protein YcbG"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SHT2 at UniProt or InterPro

Protein Sequence (154 amino acids)

>DDA3937_RS13245 macrodomain Ter protein MatP (Dickeya dadantii 3937)
MKYQQLKNLECGWKWKYLVKKHREGEPVTRFIEQSAADEAVGRLLKMESQPALVLEWIAQ
CMNPALENRMKQTIRARRKRHFNAEHQHTRKKSIDLEYLVWQRLAALAQRRGITLSETIV
QLIEDAEHKEKYASQMSLLRQDLQAMLSQPPENE